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dc.contributor.authorNYARIMA, Job Olaka
dc.date.accessioned2019-01-22T10:11:23Z
dc.date.available2019-01-22T10:11:23Z
dc.date.issued2016
dc.identifier.urihttps://repository.maseno.ac.ke/handle/123456789/1021
dc.descriptionMasters' Thesisen_US
dc.description.abstractIncidence of Salmonella resistance to various antibiotic agents, especially to the commonly available antibiotics in Kenya, is rising. Genetic elements such as Class 1 integrons have an important role in development and spread of resistance. In western Kenya, integron-mediated antibiotic resistance was reported in clinical Salmonella enteric serovars. However, no similar studies have been done to elucidate the role of class 1 integrons in fish isolates for multidrug resistant Salmonella spp. The aims of this study is to determine the levels of microbial contamination of fish, investigate antibiotic resistance mechanisms in salmonella spp isolated from Rastrineobola argentea obtained from markets (Kibuye, Luanda,Yala and Busia) and selected Winam Gulf beaches (Usenge, Dunga, Port Victoria and Uhanya). A cross sectional study design based on random sampling was used. 96 fish were sampled to determine antimicrobial susceptibility of the isolates, the incidence of resistant as well as screen Salmonella spp for the presence of class 1 integrons and characterize resistance genes. Escherichia coli, Citrobactor spp and Salmonella spp were isolated on MacConkey and XLD agar plates respectively. Biochemical tests (IMViC) confirmed E. coli while TSI, LIA, and urease confirmed the presence of Salmonella spp. API 20E further confirmed all the isolates. Susceptibilities of seven antimicrobials were determined by agar disk diffusion method on Mueller Hinton agar. PCR was used to; characterize Salmonella spp by Malic acid dehydrogenase genes, screen for the presence of resistance genes and class 1 integron. ANOVA was used to determine statistical significance. Mean Aerobic Plate Count of sun-dried R.argentiae in markets was statistically higher (p=0.003) while that of beaches varied with sampling time (wet, p=0.023); (semi-dry, p=0.03) (dry,p=0.02). By using chi-square analysis, classes 1 integrons were not significantly associated with the antibiotics; tetracycline, ampicillin, streptomycine, chloramphenicol, and sulfamethoxazole (p> 0.05). E.coli was the most frequently isolated 36.66% followed by Salmonella spp 8.33% Citobactor spp, 5.83% Klebbsiella spp and protieus spp 1.58% each. Relatively high antibiotics resistance frequencies were found especially for chloramphenical (50%), ampiciline (33.33%).Tetracycline and sulphamethoxazol 20.63% each while naldixic acid streptomycine and ciprofloxacin were 7.93%, 3.17% and 1.85% respectively. For Salmonella spp, resistance rates were; 30%, 20% and 10% to chloramphenicol, (tetracycline sulphamethoxazol and ampicilin each) and streptomycin respectively. All isolates tested were susceptible to nalidixic acid and ciprofloxacin. Three isolates (one from market and two from beach) were multidrug resistance with at least three antimicrobials. Tetracycline resistance genes (tet A) 20%, ambiciline resistance genes blaTEM 20%, and streptomycin resistance genes (aadA) 10% were detected. Integron gene was found in two isolates (20%). One was from market and the other from the beach. Fish landing sites and fish markets may be a reservoir of many and different antibiotic resistant genes. Integrons may not be associated with multidrug resistance (p>0.05) isolates from fish. Thus presence of alternative resistance mechanisms.en_US
dc.language.isoen_USen_US
dc.publisherMaseno Universityen_US
dc.subjectAntibiotic resistanceen_US
dc.titleAntibiotic resistance mechanisms in Salmonella spp isolated from Rastrineobola Argentea from selected markets and Winam gulf beaches- Kenyaen_US
dc.typeThesisen_US


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